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Satellite DNA evolution in Corvoidea inferred from short and long reads
Department of Organismal Biology – Systematic Biology Science for Life Laboratory Uppsala University Uppsala Sweden.ORCID iD: 0000-0001-5119-1837
Department of Biochemistry and Biophysics National Bioinformatics Infrastructure Sweden Science for Life Laboratory Stockholm University Solna Sweden.ORCID iD: 0000-0002-8930-534X
Department of Bioinformatics and Genetics Swedish Museum of Natural History Stockholm Sweden;Museum für Naturkunde Leibniz Institut für Evolutions‐ und Biodiversitätsforschung Berlin Germany.ORCID iD: 0000-0002-6304-9827
Swedish Museum of Natural History, Department of Bioinformatics and Genetics. Department of Bioinformatics and Genetics Swedish Museum of Natural History Stockholm Sweden.ORCID iD: 0000-0003-1680-6861
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2022 (English)In: Molecular Ecology, ISSN 0962-1083, E-ISSN 1365-294XArticle in journal (Refereed) Published
Abstract [en]

Satellite DNA (satDNA) is a fast-evolving portion of eukaryotic genomes. The homogeneous and repetitive nature of such satDNA causes problems during the assembly of genomes, and therefore it is still difficult to study it in detail in nonmodel organisms as well as across broad evolutionary timescales. Here, we combined the use of short- and long-read data to explore the diversity and evolution of satDNA between individuals of the same species and between genera of birds spanning ~40 millions of years of bird evolution using birds-of-paradise (Paradisaeidae) and crow (Corvus) species. These avian species highlighted the presence of a GC-rich Corvoidea satellitome composed of 61 satellite families and provided a set of candidate satDNA monomers for being centromeric on the basis of length, abundance, homogeneity and transcription. Surprisingly, we found that the satDNA of crow species rapidly diverged between closely related species while the satDNA appeared more similar between birds-of-paradise species belonging to different genera.

Place, publisher, year, edition, pages
2022.
National Category
Natural Sciences
Research subject
Ecosystems and species history
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URN: urn:nbn:se:nrm:diva-5001DOI: 10.1111/mec.16484OAI: oai:DiVA.org:nrm-5001DiVA, id: diva2:1718091
Funder
Knut and Alice Wallenberg FoundationSwedish Research Council, 2019-03900Swedish Research Council, 621-2014-5113Available from: 2022-12-12 Created: 2022-12-12 Last updated: 2022-12-12Bibliographically approved

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Peona, ValentinaKutschera, Verena E.Blom, Mozes P. K.Irestedt, MartinSuh, Alexander
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