In the Junggar Basin, northwestern China, the biostratigraphy and vegetation patterns of the Middle–Late Triassic sediments are comparatively poorly resolved. Here we investigate Middle–Late Triassic successions of the Dalongkou Section in the southern Junggar Basin for palynostratigraphy and vegetation patterns. Three palynological abundance zones are proposed here: the Aratrisporites Abundance Zone (Middle Triassic), the Dictyophyllidites–Aratrisporites Abundance Zone (latest Middle to early Late Triassic) and the Lycopodiacidites–Stereisporites informal abundance zone (Late Triassic). A review of previous records of the Fukangichthys Fauna indicates that this vertebrate fossil assemblage is stratigraphically located within the uppermost part of the Karamay Formation and is Middle Triassic in age. The revised dating of this and other faunas are further used to constrain the palynological zones in the Junggar Basin. Although the palynoflora is consistently dominated by non-striate bisaccate pollen (produced by seed ferns and/or conifers) in the studied section, spores record a distinctive abundance increase during the late Middle Triassic. Spore taxon abundance changes indicate a vegetational shift from a Middle Triassic–early Late Triassic community characterized by abundant lycophytes (likely Annalepis and Pleuromeia) to a Late Triassic ecosystem with abundant dipteridaceous ferns (e.g. Dictyophyllum) in the Junggar Basin and across North China. This study updates the Triassic biostratigraphy in the Junggar Basin, and sheds light on temporal floral changes in this basin and elsewhere in North China during the Middle to Late Triassic.