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  • 1.
    Atherton, Sarah
    et al.
    Swedish Museum of Natural History, Department of Zoology.
    Jondelius, Ulf
    Swedish Museum of Natural History, Department of Zoology. Stockholm University.
    Biodiversity between sand grains: Meiofauna composition across southern and western Sweden assessed by metabarcoding2020In: Biodiversity Data Journal, ISSN 1314-2836, E-ISSN 1314-2828, Vol. 8, article id e51813Article in journal (Refereed)
    Abstract [en]

    The meiofauna is an important part of the marine ecosystem, but its composition and distribution patterns are relatively unexplored. Here we assessed the biodiversity and community structure of meiofauna from five locations on the Swedish western and southern coasts using a high-throughput DNA sequencing (metabarcoding) approach. The mitochondrial cytochrome oxidase 1 (COI) mini-barcode and nuclear 18S small ribosomal subunit (18S) V1-V2 region were amplified and sequenced using Illumina MiSeq technology. Our analyses revealed a higher number of species than previously found in other areas: thirteen samples comprising 6.5 dm3 sediment revealed 708 COI and 1,639 18S metazoan OTUs. Across all sites, the majority of the metazoan biodiversity was assigned to ArthropodaNematoda and Platyhelminthes. Alpha and beta diversity measurements showed that community composition differed significantly amongst sites. OTUs initially assigned to AcoelaGastrotricha and the two Platyhelminthes sub-groups Macrostomorpha and Rhabdocoela were further investigated and assigned to species using a phylogeny-based taxonomy approach. Our results demonstrate that there is great potential for discovery of new meiofauna species even in some of the most extensively studied locations.

  • 2.
    de Jong, Yde
    et al.
    University of Amsterdam.
    Kouwenberg, Juiana
    Boumans, Louis
    Hussey, Charles
    Hyam, Roger
    Nicolson, Nicola
    Kirk, Paul
    Paton, Alan
    Michel, Ellinor
    Guiry, Michael D,
    Boegh, Phillip S.
    Aerenlund Pedersen, Henrik
    Enghoff, Henrik
    von Raab-Straube, Eckhard
    Güntsch, Anton
    Geoffroy, Marc
    Müller, Andreas
    Kohlbecker, Andreas
    Berendsohn, Walter
    Appeltans, Ward
    Arvantidis, Christos
    Vanhoorne, Bart
    Declerck, Joram
    Vandepitte, Leen
    Hernandez, Francisco
    Nash, Róisín
    Costello, Mark John
    Ouvrard, David
    Bezard-Falgas, Pascale
    Bourgoin, Thierry
    Wetzel, Florian Tobias
    Glöckler, Falko
    Korb, Günther
    Ring, Caroline
    Hagedorn, Gregor
    Häuser, Christoph
    Aktaç, Nihat
    Asan, Ahmet
    Ardelean, Adorian
    Vieira Borges, Paulo Alexandre
    Dhora, Dhimiter
    Khachatryan, Hasmik
    Malicky, Michael
    Ibrahimov, Shaig
    Tuzikov, Alexander
    De Wever, Aike
    Moncheva, Snejana
    Spassov, Nikolai
    Chobot, Karel
    Popov, Alexei
    Borsíc, Igor
    Sfenthourakis, Spyros
    Köljalg, Urmas
    Uotila, Pertti
    Olivier, Gargominy
    Dauvin, Jean-Claude
    Tarkhnishvili, David
    Chaladze, Giorgi
    Tuerkay, Michael
    Legakis, Anastasios
    Peregovits, LáslZó
    Gudmundsson, Gudmundur
    Ólafsson, Erling
    Lysaght, Liam
    Galil, Bella Sarah
    Raimondo, Francesco M.
    Domina, Gianniantonio
    Stoch, Fabio
    Minelli, Alessandro
    Spungis, Voldemars
    Budrys, Eduardas
    Olenin, Sergei
    Turpel, Armand
    Walisch, Tania
    Krpach, Vladimir
    Gambin, Marie Therese
    Ungureano, Laurentia
    Karaman, Gordan
    Kleukers, Roy M. J. C.
    Stur, Elisabeth
    Aagaard, Kaare
    Valland, Nils
    Loennechen Moen, Tori
    Bogdanowicz, Wieslaw
    Tykarski, Piotr
    Wieslawski, Jan Marcin
    Kedra, Monika
    de frias Martins, ntonio M.
    Domingos Abreu, António
    Silva, Ricardo
    Medvedev, Sergei
    Ryss, Alexander
    Simic, Smilijka
    Marhold, Karel
    Stloukal, Eduard
    Tome, Davorin
    Ramos, Marian A.
    Valdés, Benito
    Pina, Francisco
    Kullander, Sven
    Swedish Museum of Natural History, Department of Zoology.
    Anders, Telenius
    Swedish Museum of Natural History, Department of Bioinformatics and Genetics.
    Gonseth, Yves
    Tschudin, Pascal
    Sergeyeva, Oleksandra
    Vladymyrov, Volodymyr
    Bogdanovych Rizun, Volodymyr
    Raper, Chris
    Lear, Dan
    Stoev, Pavel
    Penev, Lyubomir
    Casino Rubio, Ana
    Backeljau, Thierry
    Saarenmaa, Hannu
    Ullenberg, Sandrine
    PESI - a taxonomic backbone for Europe2015In: Biodiversity Data Journal, ISSN 1314-2836, E-ISSN 1314-2828, Vol. 3, p. 1-51, article id e5848Article in journal (Refereed)
    Abstract [en]

    Reliable taxonomy underpins communication in all of biology, not least nature conservation and sustainable use of ecosystem resources. The flexibility of taxonomic interpretations, however, presents a serious challenge for end-users of taxonomic concepts. Users need standardised and continuously harmonised taxonomic reference systems, as well as high-quality and complete taxonomic data sets, but these are generally lacking for non-specialists. The solution is in dynamic, expertly curated web-based taxonomic tools.

    The Pan-European Species-directories Infrastructure (PESI) worked to solve this key issue by providing a taxonomic e-infrastructure for Europe. It strengthened the relevant social (expertise) and information (standards, data and technical) capacities of five major community networks on taxonomic indexing in Europe, which is essential for proper biodiversity assessment and monitoring activities. The key objectives of PESI were: 1) standardisation in taxonomic reference systems, 2) enhancement of the quality and completeness of taxonomic data sets and 3) creation of integrated access to taxonomic information.

    This paper describes the results of PESI and its future prospects, including the involvement in major European biodiversity informatics initiatives and programs.

  • 3. Gerdes, Klaas
    et al.
    Stöhr, Sabine
    Swedish Museum of Natural History, Department of Zoology.
    Megafauna of the German exploration licence area for seafloor massive sulphides along the Central and South East Indian Ridge (Indian Ocean)2021In: Biodiversity Data Journal, ISSN 1314-2836, E-ISSN 1314-2828, Vol. 9, p. 1-258, article id e69955Article in journal (Refereed)
  • 4. Haenel, Quiterie
    Jondelius, Ulf (Contributor)
    Swedish Museum of Natural History, Department of Zoology.
    Sundberg, Per (Contributor)
    Bourlat, Sarah (Contributor)
    NGS-based biodiversity and community structure analysis of meiofaunal eukaryotes in shell sand from Hållö island, Smögen, and soft mud from Gullmarn Fjord, Sweden2017In: Biodiversity Data Journal, ISSN 1314-2836, E-ISSN 1314-2828, Vol. 5, article id e12731Article in journal (Refereed)
  • 5.
    Haenel, Quiterie
    et al.
    Göteborgs Universitet.
    Holovachov, Oleksandr
    Swedish Museum of Natural History, Department of Zoology.
    Jondelius, Ulf
    Swedish Museum of Natural History, Department of Zoology.
    sundberg, per
    Göteborgs Universitet.
    Bourlat, Sarah
    Göteborgs Universitet.
    NGS-based biodiversity and community structure analysis of meiofaunal eukaryotes in shell sand from Hållö island, Smögen, and soft mud from Gullmarn Fjord, Sweden2017In: Biodiversity Data Journal, ISSN 1314-2836, E-ISSN 1314-2828, Vol. 5Article in journal (Refereed)
    Download full text (pdf)
    fulltext
  • 6.
    Holovachov, Oleksandr
    Swedish Museum of Natural History, Department of Zoology.
    Description of Aegialoalaimus bratteni sp. n. from Skagerrak and a review of the genus (Aegialoalaimidae, Nematoda incertae sedis).2015In: Biodiversity Data Journal, ISSN 1314-2836, E-ISSN 1314-2828, Vol. 3, p. 1-13, article id e5738Article in journal (Refereed)
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    fulltext
  • 7.
    Holovachov, Oleksandr
    Swedish Museum of Natural History, Department of Zoology.
    Metabarcoding of marine nematodes – evaluation of reference datasets used in tree-based taxonomy assignment approach2016In: Biodiversity Data Journal, ISSN 1314-2836, E-ISSN 1314-2828, Vol. 4, article id e10021Article in journal (Refereed)
    Download full text (pdf)
    fulltext
  • 8.
    Holovachov, Oleksandr
    Swedish Museum of Natural History, Department of Zoology.
    Metabarcoding of marine nematodes – evaluation of similarity scores used in alignment-based taxonomy assignment approach2016In: Biodiversity Data Journal, ISSN 1314-2836, E-ISSN 1314-2828, Vol. 4, article id e10647Article in journal (Refereed)
    Download full text (pdf)
    fulltext
  • 9.
    Holovachov, Oleksandr
    Swedish Museum of Natural History, Department of Zoology.
    Nematodes from terrestrial and freshwater habitats in the Arctic2014In: Biodiversity Data Journal, ISSN 1314-2836, E-ISSN 1314-2828, Vol. 2, no e1165Article, review/survey (Refereed)
    Abstract [en]

    We present an updated list of terrestrial and freshwater nematodes from all regions of the Arctic, for which records of properly identified nematode species are available: Svalbard, Jan Mayen, Iceland, Greenland, Nunavut, Northwest territories, Alaska, Lena River estuary, Taymyr and Severnaya Zemlya and Novaya Zemlya. The list includes 391 species belonging to 146 genera, 54 families and 10 orders of the phylum Nematoda.

    Download full text (pdf)
    fulltext
  • 10.
    Holovachov, Oleksandr
    Swedish Museum of Natural History, Department of Zoology.
    New and known species of the genus Campylaimus Cobb, 1920 (Nematoda: Araeolaimida: Diplopeltidae) from North European marine habitats2019In: Biodiversity Data Journal, ISSN 1314-2836, E-ISSN 1314-2828, Vol. 7, article id e46545Article in journal (Refereed)
  • 11. Humala, Andrei E
    et al.
    Reshchikov, Alexey
    Ichneumonidae (Hymenoptera) species new to the fauna of Norway.2014In: Biodiversity Data Journal, ISSN 1314-2836, E-ISSN 1314-2828, no 2, p. e1047-Article in journal (Refereed)
    Abstract [en]

    The present paper contains new distributional records for 61 species of ichneumon wasps (Hymenoptera, Ichneumonidae) previously unknown for Norway, six of them are reported from Scandinavia for the first time.

  • 12. Karlsson, Dave
    et al.
    Forshage, Mattias
    Swedish Museum of Natural History, Department of Zoology.
    Holston, Kevin
    Swedish Museum of Natural History, Department of Bioinformatics and Genetics.
    Ronquist, Fredrik
    Swedish Museum of Natural History, Department of Bioinformatics and Genetics.
    The data of the Swedish Malaise Trap Project, a countrywide inventory of Sweden's insect fauna2020In: Biodiversity Data Journal, ISSN 1314-2836, E-ISSN 1314-2828, Vol. 8, article id e56286Article in journal (Refereed)
    Download full text (pdf)
    fulltext
  • 13. Karlsson, Dave
    et al.
    Hartop, Emily
    Swedish Museum of Natural History, Department of Bioinformatics and Genetics.
    Forshage, Mattias
    Swedish Museum of Natural History, Department of Zoology.
    Jaschhof, Mathias
    Ronquist, Fredrik
    Swedish Museum of Natural History, Department of Zoology.
    The Swedish Malaise Trap Project: a 15 year retrospective on a countrywide inventory.2020In: Biodiversity Data Journal, ISSN 1314-2836, E-ISSN 1314-2828, Vol. 8, article id e47255Article in journal (Refereed)
    Abstract [en]

    The Swedish Malaise Trap Project (SMTP) is one of the most ambitious insect inventories ever attempted. The project was designed to target poorly known insect groups across a diverse range of habitats in Sweden. The field campaign involved the deployment of 73 Malaise traps at 55 localities across the country for three years (2003-2006). Over the past 15 years, the collected material has been hand sorted by trained technicians into over 300 taxonomic fractions suitable for expert attention. The resulting collection is a tremendous asset for entomologists around the world, especially as we now face a desperate need for baseline data to evaluate phenomena like insect decline and climate change. Here, we describe the history, organisation, methodology and logistics of the SMTP, focusing on the rationale for the decisions taken and the lessons learned along the way. The SMTP represents one of the early instances of community science applied to large-scale inventory work, with a heavy reliance on volunteers in both the field and the laboratory. We give estimates of both staff effort and volunteer effort involved. The project has been funded by the Swedish Taxonomy Initiative; in total, the inventory has cost less than 30 million SEK (approximately 3.1 million USD). Based on a subset of the samples, we characterise the size and taxonomic composition of the SMTP material. Several different extrapolation methods suggest that the material comprises around 20 million specimens in total. The material is dominated by Diptera (75% of the specimens) and Hymenoptera (15% of specimens). Amongst the Diptera, the dominant groups are Chironomidae (37% of specimens), Sciaridae (15%), Phoridae (13%), Cecidomyiidae (9.5%) and Mycetophilidae (9.4%). Within Hymenoptera, the major groups are Ichneumonidae (44% of specimens), Diaprioidea (19%), Braconidae (9.6%), Platygastroidea (8.5%) and Chalcidoidea (7.9%). The taxonomic composition varies with latitude and season. Several Diptera and Hymenoptera groups are more common in non-summer samples (collected from September to April) and in the North, while others show the opposite pattern. About 1% of the total material has been processed and identified by experts so far. This material represents over 4,000 species. One third of these had not been recorded from Sweden before and almost 700 of them are new to science. These results reveal the large amounts of taxonomic work still needed on Palaearctic insect faunas. Based on the SMTP experiences, we discuss aspects of planning and conducting future large-scale insect inventory projects using mainly traditional approaches in relation to more recent approaches that rely on molecular techniques.

  • 14.
    Leidenberger, Sonja
    et al.
    Department of Biology and Bioinformatics, University of Skövde, Sweden.
    Boström, Sven
    Swedish Museum of Natural History, Department of Zoology.
    Wayland, Matthew
    Department of Zoology, University of Cambridge, United Kingdom.
    Host records and geographical distribution of Corynosoma magdaleni, C. semerme and C. strumosum (Acanthocephala: Polymorphidae)2020In: Biodiversity Data Journal, ISSN 1314-2836, E-ISSN 1314-2828, Vol. 8, p. 1-53, article id e50500Article in journal (Refereed)
  • 15. Reshchikov, Alexey
    New species of Lathrolestes Förster (Hymenoptera: Ichneumonidae) from Côte d'Ivoire.2013In: Biodiversity Data Journal, ISSN 1314-2836, E-ISSN 1314-2828, no 1, p. e1005-Article in journal (Refereed)
    Abstract [en]

    Lathrolestesivoriensis sp. n. is described from Côte d'Ivoire. This is the second record of the genus from the Afrotropical region and the first record of the genus and the subfamily for the country. Illustrated re-description of Lathrolestesruwenzoricus (Benoit, 1955) is also provided.

  • 16. Reshchikov, Alexey
    et al.
    van Achterberg, Kees
    Review of the genus Metopheltes Uchida, 1932 (Hymenoptera, Ichneumonidae) with description of a new species from Vietnam.2014In: Biodiversity Data Journal, ISSN 1314-2836, E-ISSN 1314-2828, no 2, p. e1061-Article in journal (Refereed)
    Abstract [en]

    A new species of the genus Metopheltes Uchida (Hymenoptera: Ichneumonidae, Ctenopelmatinae), Metopheltesclypeoarmatus sp. n. is described from Vietnam. Metopheltespetiolaris Uchida, 1932 is recorded for the first time from the Russian Far East. The other previously described species are also illustrated and discussed.

  • 17.
    Stigenberg, Julia
    et al.
    Swedish Museum of Natural History, Department of Zoology.
    van Achterberg, Kees
    Review of the Palaearctic (and Oriental) Allurus (Braconidae, Euphorinae) based on material from Sweden.2016In: Biodiversity Data Journal, ISSN 1314-2836, E-ISSN 1314-2828, Vol. 4, article id e7853Article in journal (Refereed)
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    Allurus
  • 18. Stålstedt, Jeanette
    et al.
    Laydanowicz, Joanna
    Lehtinen, Pekka T
    Bergsten, Johannes
    Swedish Museum of Natural History, Department of Zoology.
    Makol, Joanna
    Checklist of terrestrial Parasitengona mites in Fennoscandia with new species- and distribution records (Acariformes: Prostigmata)2019In: Biodiversity Data Journal, ISSN 1314-2836, E-ISSN 1314-2828, Vol. 7, article id e36094Article in journal (Refereed)
    Abstract [en]

    The knowledge of terrestrial Parasitengona in Fennoscandia lies far behind that of their aquatic counterparts, the water mites (Hydrachnidia). Based on new inventories, we provide primary data and an annotated checklist of terrestrial Parasitengona in Fennoscandia including 107 species. Out of these, nineteen species are new findings for the region and five are species potentially new for science. Twenty-three species are new for Norway, fourteen for Finland and eleven for Sweden. The known recorded fauna today of terrestrial Parasitengona is 80 species for Norway, 54 for Sweden and 48 for Finland. Primary data include georeferenced locality data as well as collecting techniques and microhabitat to increase the knowledge on species' habitat requirements.

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    fulltext
1 - 18 of 18
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